rs51351773 SNP Detail

Summary

• ID
  rs51351773
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126453782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTCTAGA GCTCACATGG
  GAGACCTTTG CTGTCTTTGA TCTTCTAGGC TTTTAACATG GAAATCATTT ACCAATCCTG
  TAAGTAGATG CTAATCATAT TCTCACTGAG CCCGAGAAGT CAGTCTTCCC CTAGCCACCT
  CTCTCCTAAG TGCTAGAGGT GACCCAGGAA CACAAGCAAC TTAGCACTGA CATCAGAGCT
  W
  GGAGCTGCTG GGTCAGTTCC ACAGTTTACA CTGTGTGTAA AATCTAGCTG CCTCAGCCCT
  CCAATCTCAT GTCCACTGGC AGTTTCATGT GTCCCCTTTC TGCAATAGAA CGTCCTGGCT
  GTTTATCACA GAGTTACCTC AACTCTTTTT GGCTCACCTT CGAGGTTGTG GTCCACAGAC
  AAACATTTCG TACTCTTCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135838239	ENSMUSSNP2762763	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
ss320947056	CHEV_3_126363051	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51351773					SNP	A	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126453782 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43006	predicted gene 43006			810 bp downstream
Rr397996	regulatory region 397996			1781 bp upstream
Rr584669	regulatory region 584669			1891 bp distal
Rr584670	regulatory region 584670			986 bp distal
Rr584671	regulatory region 584671			within coordinates
Rr584672	regulatory region 584672			1729 bp proximal