rs51349671 SNP Detail

Summary

• ID
  rs51349671
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:76286209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATCTTCA GGGTAATCCT
  TGGGACTCAT AAGAGAGCCC TCTTGTGGAC CATCAGATCG TCTATCTTGG TTCCCATCAC
  TGTGTCCCCA TTGGGCCCCA GTAGGGAAAC ACTTGGAGTC CTATCAGGAT ACTCTGTGCT
  GTGCATCAGG ATGTCCTACT GTGTTGTGTC TCTGCAGAGC ATCACCTTAA GGTTTCCTCC
  R
  GGTAGCATCG TCCCTCTGGG TTTAGGATGG AGAGCGTACA TTACATTCGA GAACATTACC
  AGAATAATCC TTAACAGAAT GGGGGCCCTT GCCTCCACCT ACTCACTTTT CCAAGCGCTT
  CTTACCATAC TTCCTTTTGG ATGCTGACCA CCCCAACCCC CGGAGCTTTT GGCACATCAG
  CTACCTAGGC AGGTGGGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61289922	NES16900656	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51349671					SNP	A	A	A	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61289922	NES16900656	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76286209 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2610028H24Rik	RIKEN cDNA 2610028H24 gene			Intron
				mRNA-UTR
				Splice-Site
Rr384948	regulatory region 384948			1932 bp downstream
Rr434268	regulatory region 434268			1971 bp distal
Rr434269	regulatory region 434269			1284 bp distal
Tssr94176	transcription start site region 94176			1307 bp downstream
Tssr94177	transcription start site region 94177			1282 bp downstream
Tssr94178	transcription start site region 94178			1266 bp downstream
Tssr94179	transcription start site region 94179			1240 bp downstream