rs51349406 SNP Detail

Summary

• ID
  rs51349406
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148796127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTCCAGG TCTGCCTCCT
  TCCTTGTGCA TCTGTCTGTG GTAATTTAGA GGTTAGGGAC TGTGTGTTTT CTCCTTGTCA
  TGTTTATGCC TCACACTCTC TGGGTACCTA ATAAATGCTG AATAATAGCA GCTCTATGAC
  AGTGCAGAAC CAGAAACACA GGGTCTTCTA TTTGGTATCT CATCACCAGC AAAGCTCATT
  W
  ATTCATGGTC AGCCCCAGGC AAGGCACACA CCGGACTTCA TTAGCAGAGC CCAGAACCTA
  CCTTTGCATA CCAGCTTTTC TCTCTTATTT TCTTAACAGA ACCAAAACAA ACAAACAAAC
  AAAACAAACA AACAAACAAA ACAAAAAACA AAAGCAAAAC CATGGCTACC ACCGACCTTC
  CCTTCTCGTT ATATTCTCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61098050	NES16608484	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51349406					SNP	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61098050	NES16608484	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148796127 () rs orientation: forward

Symbol	Name	Function Class
Gm30575	predicted gene, 30575	within coordinates
Rr587261	regulatory region 587261	1770 bp distal
Rr587262	regulatory region 587262	1222 bp distal
Rr587263	regulatory region 587263	within coordinates