rs51346481 SNP Detail

Summary

• ID
  rs51346481
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141308954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACATACAA AGTACCTTCA
  GCAATTTAGG AATCTTTGTT TCTAGCAGGA CACAAACTGA ATGGGGGTGG GGGGAGCAAG
  AGGGTTCTTA GATTCTTAGC CCTGTTTGTG GAAAGCTTAG CAGAGACAAA GATGACAATA
  TTCAGGAGTT TGTCATTTGG AATGACAGTA GTAAGTGCTG TTAACCTCCT AATTAGTGTC
  Y
  GAGGCTGAAC TAATTTGGCA GATAGCAAAG TTATTGTCAT GCAGAACTCT GTGAGACTAA
  AGAAGTTAAA ATTCACCATG CTAGCTATCC CTCCTGTGTC TGCCTGGGGT AGAGCTGCAC
  CACATACCTC TGGCATCCTC TATGAGCCTG TGTTCCTCAG TGTAAATGTT ATGAATGTGA
  ATCAGTCTAG GGCTCAAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61091945	NES16600166	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		T	C	C	T		C
ss320993706	CHEV_3_141266157	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51346481					SNP	C	C	C	C	C	C	T	C	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61091945	NES16600166	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141308954 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586341	regulatory region 586341			1547 bp distal
Unc5c	unc-5 netrin receptor C			Intron
				Noncoding-Transcript-Variant