rs51340902 SNP Detail

Summary

• ID
  rs51340902
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56489372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCACATCA AATCTGAGTG
  TGTCCACTCA CATGCTGTAA CGCCAGCGCT GTGGGGAGCA GAGACGAGCA TCTATGGCCC
  TCACTGGCCG ACTGGCCTCC AAGTTCAGTG AGAGGCCTAG TATAAAGCCA GAAGGAGAAT
  GACAGAGCGA GACACCTGAA CTTACTGACA TTGCACAATC GCTGGCAGCC TCGGAGCCGA
  W
  GTCACCGTGT GCACATGTGA AGACTAGTAC TTAGCTCGTA CTTAGCTGGT TGATGTCACC
  GTGTGCACGG GTGGAAACTC GTTCTTAGCC ATTTGTTTTG TCTCTTCAGT TACATGGTTA
  TGCTCTTTGA GGAAGCCTGT TCTGTGTAAC TGATACTTGT AGTGCAGTTT AAAGTCTACA
  TTGAAACATT GTCTCAAGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61809898	NES17750312	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51340902					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61809898	NES17750312	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56489372 () rs orientation: forward

Symbol	Name	Function Class
4933404M09Rik	RIKEN cDNA 4933404M09 gene	1583 bp upstream
Gm24716	predicted gene, 24716	866 bp downstream
Rr480710	regulatory region 480710	548 bp distal
Rr480711	regulatory region 480711	968 bp proximal