rs51338567 SNP Detail

Summary

• ID
  rs51338567
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:41355119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTA AACCATGCTA TTTGGGGGCC
  C
  CTCAGACGTG CTCTTTGGTC ATGTG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146402175	ENSMUSSNP6985355	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss325809406	CHEV_19_41441170	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51338567					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:41355119 () rs orientation: forward

Symbol	Name	Function Class
Pik3ap1	phosphoinositide-3-kinase adaptor protein 1	Intron
Rr405959	regulatory region 405959	781 bp upstream
Rr547615	regulatory region 547615	807 bp distal
Rr547616	regulatory region 547616	within coordinates
Rr547617	regulatory region 547617	463 bp proximal
Rr547618	regulatory region 547618	1626 bp proximal