rs51332908 SNP Detail

Summary

• ID
  rs51332908
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38540662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAGTCTAC ATTTCAAATT TTTTTATTTG AAAACTACAA
  TGTTTCATTC CAAATATTTT CATAGATTGT TTCTTATCCA TATTCACAGT TATATTCTTC
  A
  ACAACTATGG TTGAAAAACA AGCTCATACT TAAATTTTAT GTTTATATTA ATGTTTTAAG
  CAGATTTATA TGCTGCAAAG TTATATTTCT TCCATTTTA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss134837245	ENSMUSSNP5109382	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320719975	CHEV_3_38385435	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51332908					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38540662 () rs orientation: forward

Symbol	Name	Function Class
Ankrd50	ankyrin repeat domain 50	1669 bp upstream
Cpgi13104	CpG island 13104	1107 bp distal
Gm65619	predicted gene, 65619	1030 bp downstream
Rr397648	regulatory region 397648	1463 bp downstream
Rr575676	regulatory region 575676	1398 bp distal
Rr575677	regulatory region 575677	678 bp distal
Tssr28929	transcription start site region 28929	1302 bp downstream
Tssr33057	transcription start site region 33057	1722 bp upstream
Tssr33058	transcription start site region 33058	1691 bp upstream
Tssr33059	transcription start site region 33059	1649 bp upstream