rs51329552 SNP Detail

Summary

• ID
  rs51329552
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137722807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTC TTTACATATT GTTAGTCCAC
  R
  TCTTAGTGCT CCAGTGCTAT GTGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147628384	ENSMUSSNP4367189	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss321369526	CHEV_4_137551411	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51329552					SNP	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137722807 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3			Intron
				Noncoding-Transcript-Variant
Gm70263	predicted gene, 70263			769 bp upstream
Rr398623	regulatory region 398623			1898 bp downstream
Rr602815	regulatory region 602815			502 bp distal
Rr602816	regulatory region 602816			within coordinates
Tssr39806	transcription start site region 39806			1992 bp downstream
Tssr39807	transcription start site region 39807			1763 bp downstream
Tssr39808	transcription start site region 39808			1563 bp downstream
Tssr39809	transcription start site region 39809			1390 bp downstream
Tssr39810	transcription start site region 39810			679 bp downstream
Tssr39811	transcription start site region 39811			332 bp upstream
Tssr44155	transcription start site region 44155			737 bp upstream