rs51325803 SNP Detail

Summary

• ID
  rs51325803
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:99566207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCCTTCA GGTCTTTTTT
  CAGAGCCTTG CCTAGGTTCT GATCAACGGC CAAGGCGTCT GGGTCCACCA TGGACACGTC
  GGGGTGGCGA GGAGAAGGGC TTCGGTCTTG CATGGGGGCT GGAGGTGGGT CCATGTGTTT
  GTATGTGACG GTTTTGTCTG TGGGGATAGT TTCTGACTCA TCTTCAGAGT CAATATTGGC
  R
  TCGGCTGTGA TGGAGGGGCA CTCTTCCGTC TCTGGGGGAA CATCAGAGTC TGTCTGGGAT
  GGGGCTGACT CACTGACTGA GGTGGGTGGC GTTTCATCGC ATTGCCTGCC CTGTTGTTTT
  CCTCCTGAAG GTGGGGGGGC TCCTCCAGAC TGAGTGAGGG GCTTCTCTGA TTCTTCAGTG
  GGCTCTTCAC CAGCAAACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52684841	NES15534662	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51325803					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52684841	NES15534662	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:99566207 () rs orientation: forward

Symbol	Name	Function Class
Map1b	microtubule-associated protein 1B	Coding-Synonymous
Tssr4149	transcription start site region 4149	64 bp downstream
Tssr123696	transcription start site region 123696	192 bp downstream
Tssr123697	transcription start site region 123697	382 bp downstream
Tssr123698	transcription start site region 123698	513 bp downstream
Tssr123699	transcription start site region 123699	604 bp downstream
Tssr123700	transcription start site region 123700	629 bp downstream
Tssr123701	transcription start site region 123701	687 bp downstream
Tssr123702	transcription start site region 123702	707 bp downstream
Tssr123703	transcription start site region 123703	759 bp downstream
Tssr123704	transcription start site region 123704	810 bp downstream
Tssr123705	transcription start site region 123705	1118 bp downstream
Tssr123706	transcription start site region 123706	1336 bp downstream
Tssr123707	transcription start site region 123707	1525 bp downstream
Tssr123708	transcription start site region 123708	1733 bp downstream
Tssr123709	transcription start site region 123709	1902 bp downstream