rs51324962 SNP Detail

Summary

• ID
  rs51324962
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152369197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             AAGGCCAGCA CAGAACCAGC CTGTGTCTCC TTGTTCTTGA GACGTGGTGG
  M
  CAGGCCTGTC TCCTCTCCCT CTGCAGACAG ATTTCCAACC ACAGCTGGGG           
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148080308	ENSMUSSNP2888737	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss321434065	CHEV_4_151658849	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51324962					SNP	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152369197 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15403	CpG island 15403			668 bp distal
Cpgi15404	CpG island 15404			1358 bp proximal
Gpr153	G protein-coupled receptor 153			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Hes3	hes family bHLH transcription factor 3			1232 bp downstream
Rr605825	regulatory region 605825			1345 bp distal
Rr605826	regulatory region 605826			729 bp distal
Rr605827	regulatory region 605827			955 bp proximal