rs51324605 SNP Detail

Summary

• ID
  rs51324605
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119495034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCT GGACATGTCT CAGGGCACAA
  R
  TTGTGACCCA GAAATTTTAA AAACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147338578	ENSMUSSNP4119427	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320476625	CHEV_2_119490289	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51324605					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119495034 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12124	CpG island 12124	1600 bp distal
Gm75025	predicted gene, 75025	551 bp downstream
Gm75032	predicted gene, 75032	540 bp upstream
H3f3c	H3 histone, family 3C	1073 bp downstream
Ndufaf1	NADH:ubiquinone oxidoreductase complex assembly factor 1	1732 bp upstream
Rr397235	regulatory region 397235	1581 bp downstream
Rr563557	regulatory region 563557	1766 bp distal
Rr563558	regulatory region 563558	1242 bp distal
Rr563559	regulatory region 563559	1379 bp proximal
Tssr25825	transcription start site region 25825	1718 bp upstream
Tssr25826	transcription start site region 25826	1597 bp downstream