rs51323108 SNP Detail

Summary

• ID
  rs51323108
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145123968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGATCATT GCCAGAACTG
  CCTGGCAATG CTAACGCCTC TCTCTGAGCT TTTATTTTAT GACTGCACAT TCGCTCCTAG
  AGAATAAGAG TCAGGTAGCT GATGGGGAAA TGTCAGAGCC TGACATTTCC ACTTGAATAC
  TTGGCAGACC ATCAAGACAC TCTTGGTGGG GAACCTTATG TATCCATATG GCAAGAGGCT
  R
  GAGTAGAAAC TCTGTGACCC AAGATAGACC TGCCCAGTCC CTCAGGAACC TATAAAATTA
  TGAAATATCT GTTCATAGTC TAAATTTAAT TGACCATACA AAAATATGTG TTCTTCAGGG
  TGGCACATGA TATTATGCTT TCAAGTATTT TGTTGACTAA ATAAAAGAGT ATCTATTTTA
  TGGCATTTTA ATAAAATATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
ss61093854	NES16613583	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
rs51323108					SNP	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61093854	NES16613583	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145123968 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530034A14Rik	RIKEN cDNA 9530034A14 gene			169 bp upstream
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
D530037P16Rik	RIKEN cDNA D530037P16 gene			1113 bp upstream
Rr586779	regulatory region 586779			180 bp distal
Rr586780	regulatory region 586780			within coordinates