rs51317095 SNP Detail

Summary

• ID
  rs51317095
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:121107757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA TATAAATGGC TGGGAGGAGC
  R
  GTCGGAAACC CAAGTAAAGA TCCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61237322	NES16854136	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A	A	A	A	G		G	G	G	G		G
ss137065642	ENSMUSSNP3477185	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss323230907	CHEV_9_121187809	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51317095					SNP	G	G	A	A	A	G	A	A	A	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61237322	NES16854136	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121107757 () rs orientation: forward

Symbol	Name	Function Class
Gm34655	predicted gene, 34655	within coordinates
Gm67540	predicted gene, 67540	1053 bp upstream
Rr688910	regulatory region 688910	1530 bp distal
Rr688911	regulatory region 688911	1168 bp distal
Rr688912	regulatory region 688912	1064 bp distal
Rr688913	regulatory region 688913	906 bp distal
Rr688914	regulatory region 688914	335 bp distal
Rr688915	regulatory region 688915	973 bp proximal
Tssr92036	transcription start site region 92036	1474 bp upstream
Tssr92037	transcription start site region 92037	1004 bp upstream
Ulk4	unc-51-like kinase 4	Intron