rs51316579 SNP Detail

Summary

• ID
  rs51316579
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:23439706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTTCCATT TTAGAAGAGA
  ATGAAGAAAC TTGTAAAATA AAATCAATGA ATAATCCCAC TAGGAATGGA TGTGTGCTTG
  TCTATATGAA TTTAGAGTGT CCTACCAGCA AGCATTTCTT GGCTACCTTT GTGCAGGAGA
  ATGGAGGAAT ATTGATGGGG ATCTTTCATT TTTCTACCCT AAAATCCATG TGTTCATACA
  M
  TAAGCATGCT CAACTTGAAC AGAAACATTC TGATCTTTGC TGATGAGACA ACTATGCCTT
  TATCATGTCA AACTTTCCAG TTGCCTAAGC AGACAGCCAA CATCCTAGAC AAATGTGCCT
  CCCACTGTAA CCATCTTCAC GTTCTCTATG CACTAGTATC CCACATGCCT GCGAGGGAGT
  TCGCTGCATT AGGTCCTCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60871231	NES15986320	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51316579					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60871231	NES15986320	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:23439706 () rs orientation: forward

Symbol	Name	Function Class
Cadps2	Ca2+-dependent activator protein for secretion 2	Intron
Rr627175	regulatory region 627175	255 bp proximal