rs51315641 SNP Detail

Summary

• ID
  rs51315641
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:145800086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTGGAC ATGCAGGCTG
  CCTTTGTGCT GTTCTCGCCG AGCTGGGGTA ATATTTCCCA CCTGAGGATT TGCACAGTGA
  CCTGGCTAGC AGCCTGTGTT ACACACATCT CTCTGCCTCA AGGGAAGCCA GCCTGTGCCT
  TCCCTCTAGA ATGCTGGTTA TAGAGAAAGG ACAAGATGTT GCAGCCATGA AGCAGTCTGC
  A
  AAACTGTCAC CAAGAGGCTT GACCGGGTTG CTAAGAAGAG TTCTTGGGCT CTAGGGTGCC
  ACCATGTACC TCCTGGCGAG GTGACATAGT GAAGGATGAA TATGTTCGTC TTCCGGAAGG
  CTGGTTAGAG CCACCACACA GGGCATTCTT AGTTTTGCCA CGCCCTAAGT TTGAAAGATA
  CACAAATTGC CAAGTGAGTA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320539042	CHEV_2_145783902	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs51315641					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145800086 () rs orientation: forward

Symbol	Name	Function Class
Cfap61	cilia and flagella associated protein 61	Intron
Rr397368	regulatory region 397368	398 bp downstream
Rr566613	regulatory region 566613	1127 bp distal
Rr566614	regulatory region 566614	249 bp distal
Rr566615	regulatory region 566615	522 bp distal
Rr566616	regulatory region 566616	within coordinates