rs51312580 SNP Detail

Summary

• ID
  rs51312580
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19527972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAATATTT AAAAGTGTAA
  TTACATGCTA GGCCAAAAGC TGATTTATAC ATGAAAATCT TTTAAGAAAA AAAATTTCTT
  CTTATAGTTT TTAAAGTTCC TATTGATCAT AGAAGAAGTG TTAAGATACA TACATAAGCA
  CAAACACCTG CTACCATCAC TCATGGCCAT TATTCTGTAA ATTTTCCATT CAATCATTTG
  Y
  CTGAGTATAC TTTAATTATG TTTCCACAAT CAGGGTAGAG TAGGTACACA ACACTGATTC
  TGAGTGTTTT TCACTTGGTA CTATGCTACA AAGATTCTTC CCAGCTATTG TTCTTAAATT
  ACTCATAGTT GCTTGTACCA CAAAGATAAT TACCTCCATC TTTAGTGGGT AACGCTGTAA
  GATTAATATA AAGACTGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52626602	NES15515250	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51312580					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52626602	NES15515250	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19527972 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc4	T cell receptor gamma, constant 4	756 bp upstream
Trgj4	T cell receptor gamma joining 4	1590 bp downstream
Tssr118541	transcription start site region 118541	1975 bp downstream
Tssr118542	transcription start site region 118542	1897 bp downstream
Tssr118543	transcription start site region 118543	1861 bp downstream
Tssr118544	transcription start site region 118544	1841 bp downstream
Tssr118545	transcription start site region 118545	1815 bp downstream
Tssr118546	transcription start site region 118546	1733 bp downstream
Tssr118547	transcription start site region 118547	1660 bp downstream
Tssr118548	transcription start site region 118548	1641 bp downstream
Tssr118549	transcription start site region 118549	1063 bp downstream
Tssr118550	transcription start site region 118550	343 bp downstream
Tssr118551	transcription start site region 118551	398 bp upstream
Tssr121589	transcription start site region 121589	536 bp upstream
Tssr121590	transcription start site region 121590	522 bp downstream
Tssr121591	transcription start site region 121591	1387 bp downstream
Tssr121592	transcription start site region 121592	1967 bp downstream