rs51308790 SNP Detail

Summary

• ID
  rs51308790
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152592695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCCCTGTA GGGGGCACAG
  TTCTTTTCTT AAAGTGCTGT CTCTAGACCA AGGCTGCTTT AAATCTTCTC ACTGATGTGG
  GTAAAATGAA ACAGAAATCA GAAAGGCCCA AAATGACTCA CAAGACTTTC ATGGGCTCCT
  TATAAAACCC AAGGTCCCTG GGGACTTTCC ATAAGCAAGT CAATTGTTTA AGGAAAAAGG
  G
  AAGGAAGAAA AACAGCAAGA ATGACTCTAT CAATACCCAA ACAGGCCTTA GGTAAGAAAA
  GTTTATATGG CCCTAGATGG TATATGGATA TATGTATACA AATTAATCAT CTACTGATGA
  TAAATCCTAA AGAAGTTTAT TTTAAACCAG TTCTTTAGCA TTGATATAAT TTTCCACTTA
  CTAAAGATGA AAGCAAATTT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321029046	CHEV_3_152550022	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs51308790					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152592695 () rs orientation: forward

Symbol	Name	Function Class
Rr587620	regulatory region 587620	179 bp distal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron