rs51307405 SNP Detail

Summary

• ID
  rs51307405
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:6214922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTATGGAAT CCACAGATGT
  GGATTTGTGT GTGGCTCTCA GTGGTTTTCG AATCCAGTTC AGATATATCA TAAACAAGGA
  CAAAGTTGAG CCTGGTATGG TCATATTTCT TTATCCCTGC CCTTGGGAAG AAGAGGCAAT
  GGAATCTCCA TGCCACCCTG ATATACACAG CAAACTCCAG ATCAGCCAAG GCTACTTAGT
  R
  AGACTCAGCC AAAAAAAGAA AAAGAAAAAA GACAAAAGAC ATAGAGAGTA ACTGCCCAGA
  TAACAGTTCA AAGTGAAGTC TCTCCAAGCA ACTGGTCTAT CTTTGTTTTG GCAGCTAGAC
  AATGCTGTCA CCTGTGCCAA GCACACGTTT GGTTTCTATT AATCTAAGTT CATCTTACTT
  TCTCGTTATT TGTTTGTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
ss132941787	ENSMUSSNP4745581	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss321731364	CHEV_6_6164922	CHEVERUD	SCREENING_POP	f	SNP			A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
rs51307405					SNP	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:6214922 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17135	CpG island 17135	1738 bp proximal
Rr378879	regulatory region 378879	1463 bp downstream
Rr626224	regulatory region 626224	1657 bp distal
Rr626225	regulatory region 626225	1280 bp proximal
Slc25a13	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	Intron
Tssr59765	transcription start site region 59765	428 bp downstream