rs51306778 SNP Detail

Summary

• ID
  rs51306778
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:55363909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAAATGT CCTAGTACCA
  TGTGCACTGA ATACGTGCCA GTGGGGAAAA GTACAGTAAA TAAATGTTCT CATAAGAAGT
  AAGTAGTAAC TTAATGTAGG GATAGGTCAC AGCTGTTAAA GAGCTTGTAG ACTGAAAAAT
  TGGGACCTAC GCTTAGGTTT TATATCACGG GGAAGGTATA TTAAATTGGC TAATGACTTG
  K
  AATTTATGAG TTTATTGATG CTGAGATTAT TGCCTGAGAT TTTTTTCTTT TAATGGTGGA
  TTTTAGAACA GAGTTTTGTG ATTTTGGGTT ACATCAGAAT AGCATTTAAG GAAGTGAATG
  TGACACTGGC AACTGAGAGT GTTTCTAAAA TGCACTAAAG CTTGGAGTCT TGGGGAACCG
  CTTTGGGTTC CAGCTAACTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146358182	ENSMUSSNP3083145	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51306778					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:55363909 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rad23b	RAD23 homolog B, nucleotide excision repair protein			Intron
				Noncoding-Transcript-Variant
Rr592471	regulatory region 592471			470 bp proximal
Rr592472	regulatory region 592472			671 bp proximal