rs51301992 SNP Detail

Summary

• ID
  rs51301992
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115512289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAATGAG AGAGAAAAGA
  AAAGACTAAT TTGCTTTCTG GCAGCAAATG TGTCTTTGCT GAAATTTGGT TTCAAATCTG
  ATGACTGGAG CATTGTCACT GGCTTGCCTG GAATTTAGAC CTTTGACATA TGAGGTGAGT
  GTGCTCAGAT AAGCAGGGAA GCTTTAGATC TCTGTCCTGT GAGTAGAGAA GAGAGTTCTT
  W
  AGCCACCCAG GAAATTATAG CCCATGGGGG GCCACAAGCA AGACAAAAGC AACCAGGAAC
  AAAGAACACT TAGGTTTTGA GAGAGAAAGC AAGACAAGCA TTCTTTATAC CACCAGTTTA
  GAAAGCTGGG CATGGTGGTG CATGCCTTTA ATCCCAGCAC TCGGGAGGCA GAGGCAGGCG
  GATTTCTGAG TTCGAGGCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60931456	NES16196926	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs51301992					SNP	T	T	T	T	T	A	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60931456	NES16196926	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115512289 () rs orientation: forward

Symbol	Name	Function Class
Gm36355	predicted gene, 36355	within coordinates
Rr636981	regulatory region 636981	386 bp distal
Tssr62512	transcription start site region 62512	1641 bp downstream