rs51299953 SNP Detail

Summary

• ID
  rs51299953
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:149840176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTAACAGC TTAGTATGTG
  CGGGGTGTGT GGCTTCATTG GTAGTGTGTT TGCTTGGTAT GCTTGAGTAG CATGCACAAA
  GCCCTGGGTT GAATTTTCCC AGCACTGTAT AACCCACACA AACTGGTGCA TATCCATAAT
  TCCAGCACTC TGCAGGTAGA GGCAAGAGAA TCACTATGAT TCCAAGACGA GAACTACTCA
  R
  TGGGTTCCAG GCTAGCCTAG GCTACAAAGT GCAGCCTTAC CAGAAGAACA AGAGGAGGAA
  GAGGAAGAGA AGGCTGCTGC TGCTGAGCCA GGCATGTACT CTATATATGA AGACACAGAG
  ATCATAAGTT CAAGGTCATC CTAGACTATA TAGGGAGTTG AGGTCAGTCT AGGCTAGAGA
  CCCCTGTCTT TAAGGGGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss134502958	ENSMUSSNP4023080	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs51299953					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149840176 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
DXMit153	DNA segment, Chr X, Massachusetts Institute of Technology 153			1179 bp distal
Fgd1	FYVE, RhoGEF and PH domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr694365	regulatory region 694365			1270 bp distal