rs51295709 SNP Detail

Summary

• ID
  rs51295709
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57599190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTAGCAC TTGTGAGGCA
  GAGACAGGCA CTGTGAGATT GAGGCCAGTC TGGTCTACCA CCAGAGCTAT ATAGTGAGAC
  CAAATCTTAA CAAAACAAAG CAAAGCAAGA AGAGATATAC TCCTTAATGA ATGAGAATGA
  CCATATCTAA ATGAAATATT TCATGACTGT TTCTTCTTCT GGCAGTGTGG TCTGAGGTAA
  R
  GTGCCCTCTC TGAGCTCCAG TTTTCTCTGA ATATCAAATA AAACCGAAGC CCACAGGATC
  ATTGATGTTG TCTAAGTCTC CAAAATCCTT TGCTTCCTCG TCTGTTGGCT TAAAACAAGG
  CATTTGTCAG ATAACCGGCA CACTCTTTGC AGGTGCTAGA GTTAGTGTTA TATTTTTGTC
  CTTTTATGAA TAATCGCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60414475	NES15915182	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51295709					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60414475	NES15915182	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57599190 () rs orientation: forward

Symbol	Name	Function Class
Ankub1	ankyrin repeat and ubiquitin domain containing 1	Intron
Rr577155	regulatory region 577155	71 bp proximal
Tssr33337	transcription start site region 33337	758 bp downstream