rs51291112 SNP Detail

Summary

• ID
  rs51291112
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:67511872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAATTAAC AGGCCAACCC
  ATCTGGTCTG AGGTGCCGAG GAAGTCGGGG CATCCTACAG GAAACCTACA AGCTAGGTTC
  GCTTCTCATC TCCCCCAGCT CCTTAAGCTC CACCTTTTTG TATTTGCCCG ACTTCCTCCG
  TTTGGTGACC ACCAAGACCA CCACACCAGC CACTACCGCT ACCGAGACGA CAGCGATGAC
  S
  GCAATGACGC CGGCGGTGAG GCGCTTCATG GAGAACTGGG GGGGCTTCTC GTCCAGGTAG
  TAGATGAGCG TCCGCTCCAC ATGCAGGGGT TCCCCACGCA CCTGCACGTC CAGGCCGCGG
  CGGCCCATGA ACAGTGACTC GCCTTTAATG TCCCTTTCGA AGTAGTAGGC GGCATCAGCG
  ATGTCCACGT CTCTCAAGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60894264	NES15959598	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	C	C	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51291112					SNP	G	G	G	G	G	G	C	G	G	C	C	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60894264	NES15959598	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67511872 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17511	CpG island 17511	1480 bp distal
Cpgi17512	CpG island 17512	within coordinates
Gm42889	predicted gene 42889	within coordinates
Gm67034	predicted gene, 67034	1582 bp upstream
Rr368087	regulatory region 368087	1515 bp downstream
Rr631666	regulatory region 631666	1593 bp distal
Rr631667	regulatory region 631667	1092 bp distal
Rr631668	regulatory region 631668	76 bp distal
Rr631669	regulatory region 631669	346 bp proximal
Rr631670	regulatory region 631670	897 bp proximal
Rr631671	regulatory region 631671	898 bp proximal
Rr631672	regulatory region 631672	1070 bp proximal
Tacstd2	tumor-associated calcium signal transducer 2	Coding-Synonymous
Tssr1869	transcription start site region 1869	1550 bp upstream
Tssr1870	transcription start site region 1870	1419 bp downstream
Tssr1871	transcription start site region 1871	1070 bp downstream
Tssr1872	transcription start site region 1872	107 bp upstream
Tssr61254	transcription start site region 61254	1225 bp upstream
Tssr61255	transcription start site region 61255	143 bp upstream
Tssr61256	transcription start site region 61256	306 bp downstream
Tssr61257	transcription start site region 61257	797 bp downstream
Tssr61258	transcription start site region 61258	895 bp downstream
Tssr61259	transcription start site region 61259	940 bp downstream