rs51288629 SNP Detail

Summary

• ID
  rs51288629
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108282338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGTAGTTT ACAGCCTGAG GGCTGGGTTT CCGCTGAGAG
  TGAGACACCT CCTACCTCCC TCAGTGTGTC CAGGGTGAGC CAGCTGACCC AGTTTTGAGT
  Y
  TATTTAGGAG ATAGATGGCC ACTTTCTCCT CTCCCACCAG CCTGTATATC TTGCTGCTTC
  TGCCTTCGGT CAGGGTCAAG ATGCAGATAG CCTTGAGCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133499135	ENSMUSSNP1173861	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51288629					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108282338 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636071	regulatory region 636071	within coordinates
Rr636072	regulatory region 636072	864 bp proximal
Rr636073	regulatory region 636073	1603 bp proximal