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rs51288629 SNP Detail
Summary
  • ID
    rs51288629
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:108282338 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          TGGGTAGTTT ACAGCCTGAG GGCTGGGTTT CCGCTGAGAG
    TGAGACACCT CCTACCTCCC TCAGTGTGTC CAGGGTGAGC CAGCTGACCC AGTTTTGAGT
    Y
    TATTTAGGAG ATAGATGGCC ACTTTCTCCT CTCCCACCAG CCTGTATATC TTGCTGCTTC
    TGCCTTCGGT CAGGGTCAAG ATGCAGATAG CCTTGAGCA                       
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
ss133499135 ENSMUSSNP1173861 ENSEMBL ENSEMBL_Sanger f SNP C C T
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
rs51288629 SNP C C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:108282338 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Itpr1 inositol 1,4,5-trisphosphate receptor 1 Intron
Rr636071 regulatory region 636071 within coordinates
Rr636072 regulatory region 636072 864 bp proximal
Rr636073 regulatory region 636073 1603 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory