rs51287647 SNP Detail

Summary

• ID
  rs51287647
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41360192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCTAGAAAT GCTGGACTTA TTTTTTCCAT TTGTGCAAGC
  ATTACACACT GTATTAAATC TGTATGGTCT TATCTATCTA TGTAGGTTCA ATGACAAAAA
  W
  AATAAAGTCT TCTCTAAGTA ATGGAAAAAA AAGGATAAAG AAAATGGATA TTTTGGGAGA
  CAAGGTCTTG CTGTGTAGCC ACAGTTGAGC TGGTAGTCAC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60600955	NES16305588	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs51287647					SNP	A	A	A	A	A	A	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60600955	NES16305588	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41360192 () rs orientation: forward

Symbol	Name	Function Class
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr77023	transcription start site region 77023	1535 bp downstream
Tssr77024	transcription start site region 77024	1331 bp downstream
Tssr77025	transcription start site region 77025	1284 bp downstream
Tssr77026	transcription start site region 77026	874 bp downstream
Tssr77027	transcription start site region 77027	545 bp downstream
Tssr77028	transcription start site region 77028	440 bp downstream
Tssr77029	transcription start site region 77029	270 bp downstream
Tssr77030	transcription start site region 77030	745 bp upstream
Tssr77031	transcription start site region 77031	891 bp upstream
Tssr77032	transcription start site region 77032	1250 bp upstream
Tssr77033	transcription start site region 77033	1513 bp upstream
Tssr77034	transcription start site region 77034	1576 bp upstream