rs51285904 SNP Detail

Summary

• ID
  rs51285904
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:63806239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAGTCTA GAGAAAGACT
  TGGGCTCCAC AGTGAAGCAA AGCAAAACAG CTCTGCTCTT CAAGTGGCGT CTCCGACCCG
  GTACTGTTGC CATGGTATCC CGCGCAGGCG CAGAGAACAC CTTCACAGCC CGGGCGTCGC
  TTCGGTAACC CATGATTTGT CGCTAGGAAA GGGCAGTTGG AGTAAATCCT TCTCGCACCT
  W
  ATGCCCGGAG CTTTTTGAAC AGTAAGACTC GCACCGGCAA CTAAGGGCGC GCTTCTGGGA
  CCGCAGAACT GCTTTCCAGG CGGCCAGAGC CAGGGGAGGT CTTGTGGGAT CATTCCGCCG
  CGATGCGGGA CCCTCCCGGT GGCTGGACCT CTGCCACCAA CCAGGGCAGG GAAGGTCTTG
  CTCAGGCACA AAAGCCCACG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60416434	NES15918977	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51285904					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60416434	NES15918977	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:63806239 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13219	CpG island 13219	within coordinates
Plch1	phospholipase C, eta 1	Intron
Rr577601	regulatory region 577601	1331 bp distal
Rr577602	regulatory region 577602	within coordinates
Rr577603	regulatory region 577603	545 bp proximal
Tssr33440	transcription start site region 33440	578 bp downstream
Tssr33441	transcription start site region 33441	592 bp downstream
Tssr33442	transcription start site region 33442	619 bp downstream