rs51284677 SNP Detail

Summary

• ID
  rs51284677
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123029753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATCTTCTC CTTTCAGTTG GGCAGCATCA AGAGCTTGAG
  AAAGCCAGGG GAAGCCGCGG TGCAGGAGAG GACGCGTCTT AAGCTGGGCT GGTGGTGCAG
  G
  GGGTGCAGGA CGCAAGGCTG CCCCGCTGCC GGCTGCGGGG AAAGTGCGCG GAGGCCGAGC
  CTCCCCACCG CCCTCCCAGC ACCTGTACCG CCCTCTCTT                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135760896	ENSMUSSNP6286753	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51284677					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123029753 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13775	CpG island 13775			within coordinates
Rr584473	regulatory region 584473			1233 bp distal
Rr584474	regulatory region 584474			1405 bp distal
Rr584475	regulatory region 584475			within coordinates
Rr584476	regulatory region 584476			816 bp proximal
Synpo2	synaptopodin 2			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr35497	transcription start site region 35497			7 bp downstream
Tssr35498	transcription start site region 35498			30 bp downstream