rs51283434 SNP Detail

Summary

• ID
  rs51283434
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102110178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATC CAATCCAAAC TACATCAGAC
  R
  CAATGCAAGG TGTGCCTTTG GGTAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135554817	ENSMUSSNP4119624	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320854821	CHEV_3_102006785	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51283434					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102110178 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13625	CpG island 13625			747 bp proximal
Gm16160	predicted gene 16160			within coordinates
Rr582207	regulatory region 582207			275 bp proximal
Rr582208	regulatory region 582208			1091 bp proximal
Rr582209	regulatory region 582209			1194 bp proximal
Rr582210	regulatory region 582210			1821 bp proximal
Tssr34830	transcription start site region 34830			1714 bp downstream
Vangl1	VANGL planar cell polarity 1			Intron
				Noncoding-Transcript-Variant