rs51281062 SNP Detail

Summary

• ID
  rs51281062
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90414132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACATGAATA CAGGAAATTA ATGTATCACA TCTTAAAAGA
  TGAACAGAGA AGCACATGTG CTTCTGAAGC AAACACAGGC ACTAAATTAA ATGCCTTGGG
  W
  GTTCTAGCAA CAACATAATA AAATGGTGAA AGACACCAAA TAAATGAAAT TCTCAGAAAC
  AAAAACTGCC TTTAAATACA AATAACCACT CTTTCTGACT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60424400	NES15924234	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51281062					SNP	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424400	NES15924234	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90414132 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chtop	chromatin target of PRMT1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi13465	CpG island 13465			1936 bp proximal
Rr580380	regulatory region 580380			1303 bp distal
Rr580381	regulatory region 580381			1649 bp proximal
Tssr34235	transcription start site region 34235			444 bp upstream
Tssr34236	transcription start site region 34236			1234 bp downstream
Tssr34237	transcription start site region 34237			1902 bp downstream