rs51278611 SNP Detail

Summary

• ID
  rs51278611
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135002370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAACA GATTAAAGTC CCCTCACAGT
  M
  TAGCCTTTCC ACCGTGATCC CAAAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147543366	ENSMUSSNP1308670	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss321351521	CHEV_4_134830974	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51278611					SNP	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135002370 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15068	CpG island 15068	1436 bp distal
Rr398589	regulatory region 398589	1868 bp downstream
Rr601980	regulatory region 601980	1755 bp distal
Rr601981	regulatory region 601981	1930 bp distal
Rr601982	regulatory region 601982	within coordinates
Rr601983	regulatory region 601983	1755 bp proximal