rs51271322 SNP Detail

Summary

• ID
  rs51271322
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19947067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGGACAT AATATACAGG
  CACAAGCTAC CGAGCCTTTT GTTGGGCCCT ATTTGGCCTT GGTTTGGGCT CAATTTTTGA
  GACCCGTCAT TCTCCTCCAC TTGAGAATGA CTCAGCACGA CCTACCAACC TGATTGAGAC
  TGCCTCTGCC TAGCTACTGC TGATGTAGGC CCCGTGAGAT AACCCCACAC CCCTCGTCAT
  Y
  TCACTCCATC ACATATGTCA TCTCACCCCA TATCCCTACC CCCACCTCCT TGCCTTCTCT
  ATATAAGCAA GTATCTAGTT TAATAAAGTG AGTTTCTGCT TTGACAACAC TCCTGGCCCA
  GGTGTGTTTG TTTGGGGCCA TCAACACTCA CCATCCCACT CAGCCTCAGA GAGGCTGAAG
  TGAGCTCTCT CCTCTCGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134671189	ENSMUSSNP5527388	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51271322					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19947067 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13006	CpG island 13006	1655 bp proximal
Gm64742	predicted gene, 64742	1953 bp upstream
Rr574033	regulatory region 574033	1463 bp proximal
Rr574034	regulatory region 574034	1894 bp proximal
Rr574035	regulatory region 574035	1964 bp proximal
Tssr28531	transcription start site region 28531	1952 bp upstream
Tssr28532	transcription start site region 28532	2000 bp upstream