rs51267722 SNP Detail

Summary

• ID
  rs51267722
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172696363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAGGGCC TGCCCCCAAA
  CATGCCTGCG GTGTATTTGT TCCCTCCCTG ACTCACTTCC TTACTCCCCT CCCCACAACA
  CATCCCACAA TCCTGTGCCA CCTTCTGCAG CCAGCTGAGC CCCACAGATG ACTTGCCTAG
  CACAAACAGC ACGGTCCCTC TGCTGCTGCT GCCACCAGTC CATCCCACAC TCAGACTGGC
  Y
  CTGGACAACC AGCACCATGA ATGTCATACC CATGTCTTAC CTGGGGCAGG CAGACAAGAG
  TCAGACATTC TTAGAGGTAA CCATCAGGAT GGGTTGTTCA GAGTCTGGCA TAACCCTATA
  CATTGCCACT GCGTGACAGA TGCCAGCTAT TTGAGATAGA ATTGGTTGGA TCCAGGGGCA
  GCCTGTGGGT GCAGTCTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148324269	ENSMUSSNP2996170	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320620547	CHEV_2_172680071	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51267722					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172696363 () rs orientation: forward

Symbol	Name	Function Class
Gm36254	predicted gene, 36254	within coordinates
Rr571755	regulatory region 571755	214 bp distal
Rr571756	regulatory region 571756	16 bp distal
Rr571757	regulatory region 571757	1683 bp proximal