rs51261559 SNP Detail

Summary

• ID
  rs51261559
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134906066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAGCTGG TGGTTGCCAA
  GCTGAGACCA TAGCCTGAAA ATTGGGGCTG TGGATAATGG TGTGGGGACC TAGCTTGATA
  ATCCCCCTCT ACTCAGATAA TCCCCCCACC CCAAGCCTGT GCCCCTGACC AGATGGGACA
  TACAGATTTT CCTAAGATAG ATGTGGTTCT GTGGTACCCA TTTCAGAGTT CTAAGATCTT
  K
  CCCTTTTGTA GGACCAGCCT AAGATCAACC GCCAACAAGA AGTTCCTGTT TTCCCAGCCT
  AGACCCTGGA CCCTTTCCTA CCCAGTAGCG CCACAGGATT CTAACCACAA CTAATGCAAG
  ACCTGTCCCC AGGTACACCC AGGGTGGGTC ACCCAGCAGG ACCCCTCCCT GGGTTGGAAC
  AGGAAACTGT CTTCACAGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147540832	ENSMUSSNP2201593	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	T
ss321351084	CHEV_4_134734670	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51261559					SNP	T	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134906066 () rs orientation: forward

Symbol	Name	Function Class
Rr601942	regulatory region 601942	174 bp proximal
Rr601943	regulatory region 601943	381 bp proximal
Runx3	runt related transcription factor 3	765 bp downstream