rs51258200 SNP Detail

Summary

• ID
  rs51258200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163551816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAGGCCA TATTTTTTAA
  AATATTTATT TATTTATTTA TTTATTTATT ATATGTAAGT ACACTATAGT GTATCTTCAG
  ACACTCCAGA AGAGAATATC AGATTTCATT ATGCATGGTT GTGAGCCACC ATGTGGTTGC
  TGGGATTTGA ACTCAGGACC TTTGGAAAAG CAGTTGGCGT TCTTAACCAC TGAGCCAGCT
  Y
  ACCAGCCCCC GTAAGGCCAT ACTTGTGTCT GGCTGTTCTG TGTACACAGC ATGTAGTCAC
  AAATCTGGTA CTCAGTGAGT GGTCGGTGAG TTTTTTGGAT GAATGGATGA CTATAAGAGA
  GATGATAATA TCTTGTTTCT TTTCACCCTC CTCAGTGTAT TTTGGGGTGA CTTTGACAGG
  ACTCTTAGAG GAGCTGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148209579	ENSMUSSNP5229523	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51258200					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163551816 () rs orientation: forward

Symbol	Name	Function Class
Pkig	protein kinase inhibitor, gamma	Intron
Rr569473	regulatory region 569473	884 bp proximal