rs51256420 SNP Detail

Summary

• ID
  rs51256420
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123031330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACTTTTGGA GACTGTGGAA TCATTGTGAC TGTGTCTAAC
  CTAGCACAGG TGGGTCACCA AGGGTGGGCC TTAAAGGGCC ATGTCCACTT CTGGCTCTGG
  S
  CAAAACTTTC TGCTTCATAT CTGCTTCAGC ATCTGAGGGG CATGGGCCAT GCTTTCCTGC
  TGCTATGATA GACTGTATCC CTAAACCTGT AACCAGAAT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320918255	CHEV_3_122940599	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs51256420					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123031330 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13775	CpG island 13775	1329 bp distal
Rr584475	regulatory region 584475	1255 bp distal
Rr584476	regulatory region 584476	180 bp distal
Synpo2	synaptopodin 2	1532 bp upstream
Tssr35497	transcription start site region 35497	1559 bp upstream
Tssr35498	transcription start site region 35498	1524 bp upstream