rs51250017 SNP Detail

Summary

• ID
  rs51250017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127743212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACGGGATA TGTGCTCCTT
  CTTCGCTGAT CCAGGCTGCT AAGCCTCTCA GTCTCAGATC TCAGAAGCTA CCTCTGCCTG
  ATAGCAGGGA GGACCCTCTC TGTGTACACT GTCCTTATGT CCAGCCACTG CCTTCTGAAG
  ATCTGGCTTC TGATTTTTCA GTCCCTGTAA CTTGCCTCTT TCTCCACAGA AGTCTTACTG
  Y
  ATGGACATAT TTTTGAGCAC GAAGACTCTT TGTCTTGACT TCGTTTTTCT TCCCTGGATG
  GACCCTTCAT GACATCAACT CGGGAAAAAG GATCCTCTGA ACTGGCTGAG CCCTCAGTGG
  GTTCCATAGT GACTGTCTTG CGTAGAACCT ATAGGCCCGT GTTAAGTGTC TAGATACGCA
  CCTTTCTCTT AAAACAGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135875960	ENSMUSSNP6589567	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320958556	CHEV_3_127652481	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51250017					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127743212 () rs orientation: forward

Symbol	Name	Function Class
9830132P13Rik	RIKEN cDNA 9830132P13 gene	within coordinates
Rr398010	regulatory region 398010	242 bp downstream
Rr584909	regulatory region 584909	943 bp distal
Rr584910	regulatory region 584910	144 bp distal
Rr584911	regulatory region 584911	442 bp distal
Tssr31619	transcription start site region 31619	740 bp upstream