rs51248685 SNP Detail

Summary

• ID
  rs51248685
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127647135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCACAAA CTTCCCACCG
  CAAACTAATC TTAATAATTT ATAATAATAT ATACATTTGT TACAATGTTT TACTAAAAAC
  TCTCTAAGTA CTTCAGGCAA GCCCAAATTA TTTGCCTTTT AAAGAAGACT AAAACTCTAG
  GCCTATAATA AAAACTAGAG TGCATCCTTA GGTCAGACCA AGCCTTACAG GCTATGCTGA
  S
  ACGAGTAAGA TTAGCTGTGC TCTGTTCAGC CAAAAGGGGG AGCCATGTCG CCTCTGAGGA
  CCAGCGTTCA GTTTGACAGT CAGCCAGAAA CAGATTCTTC CCAACAAGAA AGGCTTCTTG
  GTGTATTAAA AGGTTGCATA CGAGGAACGG CAGTACGGCT GAGGCTATGG ATGGTGGCCA
  TTACACCAGG AAAGCCTTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135873128	ENSMUSSNP426124	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
ss320957509	CHEV_3_127556404	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51248685					SNP	G	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127647135 () rs orientation: forward

Symbol	Name	Function Class
Rr584883	regulatory region 584883	1476 bp distal
Rr584884	regulatory region 584884	187 bp distal
Rr584885	regulatory region 584885	within coordinates
Rr584886	regulatory region 584886	26 bp proximal