rs51245015 SNP Detail

Summary

• ID
  rs51245015
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:41532987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATCAGTCT AGCTTGAGGT
  TGTTCCCTGA AGTCTGGGAT GAGGGCGTTT TGATGGTCAG TGACTCCAAG TTCTCGCCAC
  TTTGTTTAGG AAAATGTAGG TTGACTGGTG AGTGAGGATG GAGGAACTTC CGCACTTTGT
  TTAGCAGGCA AGTTCTCTGG GTCTCCCTGG ACTCTCTCAT CGTTCTCAGT TCACCTGCTC
  S
  GGAGGTGGTG CACTCCGTTC AGGCGGGGCT GCATCACACT GTTACTCTTT AGGCATTCCA
  CCTTCAGGTG GCGATTTTCG AATTTTAAAA CCCTCTAACT CAGGCTCCAG AGAGCTGAAG
  CTGCTGTGAG GAGAGGTGTG TCCTCTCTCT GTGCCCCTGG GGAGCAGGGA TGGCCCTCAA
  AGGCTGGCAG AGAGTAAAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60397521	NES15899459	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C		C	G	C
ss135042224	ENSMUSSNP5418775	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51245015					SNP	C	C	C	C	C	C	G	C	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60397521	NES15899459	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41532987 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Jade1	jade family PHD finger 1			Intron
				Noncoding-Transcript-Variant
Rr575976	regulatory region 575976			2000 bp proximal