rs51244511 SNP Detail

Summary

• ID
  rs51244511
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122212031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CCATCCAGTT GCCTGTCTGT GGTGGTTAAT TTTGTCAGTC
  TGAACACTCT AGAACAGTGG CTGGTTCTCC CGCTTTAACA CAGTGGCTGT GGTGACCCCC
  A
  CCCCCCAGCC ATAAAATTGT TTTTGTTGCT ACTTCATAAC TGTAATGTTG CTGCTGTTAT
  GAATCATGAT GCAAATACCT GGTATTTACA TCATATCTGT A                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss135741279	ENSMUSSNP784149	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs51244511					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122212031 () rs orientation: forward

Symbol	Name	Function Class
Bcar3	breast cancer anti-estrogen resistance 3	1375 bp upstream
Cpgi13768	CpG island 13768	1171 bp proximal
Rr397985	regulatory region 397985	1199 bp upstream
Rr584325	regulatory region 584325	429 bp proximal
Rr584326	regulatory region 584326	959 bp proximal
Rr584327	regulatory region 584327	1407 bp proximal
Tssr31494	transcription start site region 31494	1357 bp upstream
Tssr31495	transcription start site region 31495	1390 bp upstream
Tssr31496	transcription start site region 31496	1411 bp upstream
Tssr31497	transcription start site region 31497	1484 bp upstream
Tssr31498	transcription start site region 31498	1603 bp upstream