rs51241080 SNP Detail

Summary

• ID
  rs51241080
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:22032554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAGC CAGTTATGAT ATCATTAGCA
  R
  CAATGTACTA CGGAGGCTTG GTGAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52177462	NES15227160	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	G	G	G	A	G	A	G	G
ss146959922	ENSMUSSNP883707	ENSEMBL	ENSEMBL_Sanger	f	SNP								G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51241080					SNP	A	A	G	A	A	G	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52177462	NES15227160	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:22032554 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1373	CpG island 1373	1744 bp proximal
Raet1a	retinoic acid early transcript 1, alpha	1954 bp upstream
Raet1e	retinoic acid early transcript 1E	1887 bp upstream
Rr428833	regulatory region 428833	1424 bp proximal
Rr428834	regulatory region 428834	1942 bp proximal
Tssr92677	transcription start site region 92677	1740 bp upstream
Tssr92678	transcription start site region 92678	1814 bp upstream
Tssr92679	transcription start site region 92679	1866 bp upstream
Tssr92680	transcription start site region 92680	1911 bp upstream