rs51240440 SNP Detail

Summary

• ID
  rs51240440
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:82961474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACACGTAC ATCTTATTCT
  TTTCGTTTGT TTTGGTTTTA TTCTCTGTGT AGTTCTGGCC CTGGCTATCC TGGAACTCAG
  AGATCCGACT GCCTCTGCCT CCTCAGTACT GGGATTAAAG GCGTGCGCCA ACACCTCTGA
  ACTGGGACTC CTAACCAGCC AAAGATCCTG GATCCCTTCA AATACAAGAA AATAGGAGGG
  R
  GGCCATAGCA AACAGAAAAA CCCAGGTTCC TATATGAACA GGAGATCTGT GTATGATATG
  TGTGATTTAT GGGTCTCATG ACTAGATAAT AGGATCACCC AAGCTATTCA TTTAAGAAGG
  AAATTTTCAC ACGGGTGGCT TAATTCAAGA GCTGTAAGAA GAGTAAAACC TAGTGTGGTT
  TACCTCAGTA GACTGCCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss135410475	ENSMUSSNP2048490	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320820925	CHEV_3_82858089	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs51240440					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82961474 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13295	CpG island 13295	878 bp proximal
Plrg1	pleiotropic regulator 1	1371 bp upstream
Rr397732	regulatory region 397732	1082 bp upstream
Rr578826	regulatory region 578826	3 bp distal
Rr578827	regulatory region 578827	249 bp distal
Rr578828	regulatory region 578828	865 bp proximal
Rr578829	regulatory region 578829	1274 bp proximal
Rr578830	regulatory region 578830	1399 bp proximal
Tssr29713	transcription start site region 29713	1349 bp upstream
Tssr29714	transcription start site region 29714	1408 bp upstream
Tssr29715	transcription start site region 29715	1427 bp upstream