rs51240405 SNP Detail

Summary

• ID
  rs51240405
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:62446524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCTACAAA ATGTTTTAGA ATAATATAAA TCTTAAAAAA
  TTTACACAAG CAGTCTTAAA AGTCTATCGG TGTTATTTCC TTTAAACAAG TACATGATGA
  K
  AAGAAAAAGG CTAATCATGA AAAGCACATT AAATTTTATT TCCTAGAATA GGAAAAAATA
  TTATTCAGTC TACTAGTGTG TAAATTCTCT TCTATCTAA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146703029	ENSMUSSNP382533	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51240405					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:62446524 () rs orientation: forward

Symbol	Name	Function Class
Ifih1	interferon induced with helicase C domain 1	Intron
Rr557887	regulatory region 557887	1524 bp proximal
Tssr24301	transcription start site region 24301	466 bp upstream
Tssr24302	transcription start site region 24302	1075 bp downstream
Tssr24303	transcription start site region 24303	1100 bp downstream
Tssr24304	transcription start site region 24304	1147 bp downstream
Tssr24305	transcription start site region 24305	1168 bp downstream