rs51240297 SNP Detail

Summary

• ID
  rs51240297
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67513630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCACAAT CCAGTTGTCA
  TGGTGTGCCA CATATGAAAA GTCCTATTGA ACAATGCATA TGCCTGTACT TGTGTAAGAT
  AAATGAAAAG AAAAAAAATT GTAGAGTAAG CCAGTCCACT AGGAGAGATG TACAATTTGA
  TTCTAAGAGA GGCAATTTTT TATTTTCTTT CCCTGTATTG AATGATATAA CGAGAGAAGG
  R
  AGCCTGTGAG AAACTGTGCT TCTTTAATAG GATGAAGGAG CGACACTCTC TTTTAGAATC
  TAGAGAAAGT CCACCGCTCA AAGCTGTGGT AAAATTAACA ATAATTAACA AACTATAATT
  ATTTCCAGGC CCACCTTCAA AATACATTTT ATATATATCA GCATTTAATG TACGCCACTA
  GAATACTGAA CAAGGGTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60894253	NES15959624	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A		A	G	A		G
ss321812344	CHEV_6_67486640	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51240297					SNP	G	G	G	G	G	G	G	G	G	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60894253	NES15959624	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67513630 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17512	CpG island 17512	770 bp distal
Gm42889	predicted gene 42889	within coordinates
Rr631668	regulatory region 631668	1834 bp distal
Rr631669	regulatory region 631669	1391 bp distal
Rr631670	regulatory region 631670	840 bp distal
Rr631671	regulatory region 631671	570 bp distal
Rr631672	regulatory region 631672	667 bp distal
Tacstd2	tumor-associated calcium signal transducer 2	850 bp upstream
Tssr1872	transcription start site region 1872	1865 bp upstream
Tssr61255	transcription start site region 61255	1901 bp upstream
Tssr61256	transcription start site region 61256	1420 bp upstream
Tssr61257	transcription start site region 61257	949 bp upstream
Tssr61258	transcription start site region 61258	844 bp upstream
Tssr61259	transcription start site region 61259	776 bp upstream