rs51238446 SNP Detail

Summary

• ID
  rs51238446
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137722800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTC TGTGTTCTTT ACATATTGTT
  R
  GTCCACATCT TAGTGCTCCA GTGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147628379	ENSMUSSNP6761403	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss321369525	CHEV_4_137551404	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51238446					SNP	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137722800 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3			Intron
				Noncoding-Transcript-Variant
Gm70263	predicted gene, 70263			762 bp upstream
Rr398623	regulatory region 398623			1891 bp downstream
Rr602815	regulatory region 602815			495 bp distal
Rr602816	regulatory region 602816			within coordinates
Tssr39806	transcription start site region 39806			1985 bp downstream
Tssr39807	transcription start site region 39807			1756 bp downstream
Tssr39808	transcription start site region 39808			1556 bp downstream
Tssr39809	transcription start site region 39809			1383 bp downstream
Tssr39810	transcription start site region 39810			672 bp downstream
Tssr39811	transcription start site region 39811			339 bp upstream
Tssr44155	transcription start site region 44155			730 bp upstream