rs51237179 SNP Detail

Summary

• ID
  rs51237179
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:134600340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GGTGCTTAGT GGACGGGACT CGGTTGTCTT CAGACCCTTT
  CCTTAGGTGG TGAGTGCACT GTTAGTTCAG GCAGCTGCTT CTTTAGCAGG TTTCTTTGCA
  R
  GGCTGGACAC TTAGAACCTT GCTCCACCCA GACCTCTCTC CTTCCTGGTG ACCTCAGATT
  GTCCCAGGAA GCCCACCTTG GTAGGCTGTC CTGGTCCCCT C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145510979	ENSMUSSNP7108386	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51237179					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134600340 () rs orientation: forward

Symbol	Name	Function Class
Rr418973	regulatory region 418973	1802 bp proximal
Rr418974	regulatory region 418974	1883 bp proximal
Syt2	synaptotagmin II	Intron