rs51235461 SNP Detail

Summary

• ID
  rs51235461
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164659936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCTCTGC ACTGTGCTCA
  TAACAGACAC AGATGTTCTC AGCCCCAGGC CCCTCCACCT TGTTATCATA AGACTGACAT
  ATCCTGTTTT CCTAAACTTG CCCCACAGGG TGGGCGAACT GGACCAGCTG GATGAGTGTT
  TGGAAAAGAG TAGGCGGAGC TCCCAGGCTG CCTGTCAAGC TAGAGGCTGA GAGTTCTTTT
  Y
  CCTTCTCCTT GGGGTTTCAG CTGGGCCACT CCCTGAGGAG GCAGGGGTGT GGCCCATCCC
  ACCCACTGGT GGCCCTTGAC TCATTCATCC ACTATATCTC TGATAAGCAT CTTCTAAAGG
  TGCAGCATTG TGTTAAGTCT GAGGAGCACA TTGAGGAATG ATTTAGTCTT GGCACATGAG
  ACATCCCCAC TAAATGTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148232074	ENSMUSSNP1513508	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs51235461					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164659936 () rs orientation: forward

Symbol	Name	Function Class
Gm75078	predicted gene, 75078	1824 bp downstream
Rr569718	regulatory region 569718	1821 bp distal
Rr569720	regulatory region 569720	282 bp distal
Rr569721	regulatory region 569721	within coordinates
Rr569722	regulatory region 569722	196 bp distal
Zswim3	zinc finger SWIM-type containing 3	Intron