rs51234506 SNP Detail

Summary

• ID
  rs51234506
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115974293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAGCTGG TACAGGAATC
  CTTTCTCGGG AAGCAGAAAT TAGGAAAGCA CCCTCTATCC AGCCTCAACA TTTCCACATA
  CCCTCAAGTC TTAGGAGCTG AGACTCCTGC ATCAAAAGCT CTGGCTTCTT GGGGTTCGAT
  GAGAAGTCCA AGCTTTTTTG ATGGAGTTTT GTTTGGAAGT TGTGATTTCT CCATGGCCAC
  Y
  ACTGAGACCC AGGTGACCTT TTCTCATGAT TCCAAAGCAG CAGCCAAAAA CCAGCATTTT
  GAAACTGAAT CTGGGACAAA GGTTATAAAC CGGAGGCCTC ACAGTGTTCT CGACAACAAT
  GTCGGTTATA GTGAGGCTTA CAAGATCAGT GAAATGAAAG AAGTGCTATC CTGTAAAGGA
  TGTACCCAAG TTGGAACAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60438044	NES15933440	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	C	T	C		T
ss320894506	CHEV_3_115883562	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51234506					SNP	T	T	T	T	T	T	C	T	T	T	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60438044	NES15933440	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115974293 () rs orientation: forward

Symbol	Name	Function Class
Rr583660	regulatory region 583660	within coordinates