rs51232059 SNP Detail

Summary

• ID
  rs51232059
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13153024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGTGACAA GCCTAACTGT
  GAGTCCCCTC CCACAAAACA GCAAAACACA ACACCAAACA AAAGCCTACC TCTGTCTTAC
  AGTAGAACCC TTCTTACTTA GCAGAGTGGT CCAGCAGCTG TGGCCCACGA TGCTTTAGAC
  AGCCATGGAA ATGGGAAGAA TGGAGTTTCA GGTGTGGTCT TTTAACACTC ATGCACTCTT
  S
  TTTATACCAA CATGACTATA ATACATAATT TTGTTTATTT GGGAGACTGG GGATTAGAAC
  CACAACCTTC CTGAGTGCTG AGTATGTACA CGTCCTTTAA GCACTATGCC CAGGCTTAGG
  TTTTAAATGG AAAAAGCACA TGACAACTGG CCTTAAGGTC CACTAAAGGC GCACAGGTCT
  TACTTGCAGT TCAATTAATA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60864609	NES15985713	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51232059					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60864609	NES15985713	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13153024 () rs orientation: forward

Symbol	Name	Function Class
Rr626556	regulatory region 626556	473 bp distal
Rr626557	regulatory region 626557	559 bp distal