rs51231546 SNP Detail

Summary

• ID
  rs51231546
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50276266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTAGCCT GTCCTGAGAA
  ATCTATCCAT GCTAGCCAGC AGCCTCAGCT GCAAATGGGA CAAGATGGCC CAGCACTGGG
  ACCAGCTCTG AACGTGTCCC TTCTTCCGCT ACAAGGAGGC AGTGCTGAGC CACTGGGGAG
  GAGCAGGAGA GCCAAAGGGG AAGTCCCCAA TCCTGTTTTG GGACAGTCAT GAAGAAGTAC
  W
  CCCCACCCCC ACCTCCTCCA GGCACAAACC TGAAAAACCG GGGCTGGTGC TCCACACCGT
  TCTCCTCCAA GACCCTCCGC CGCTCTCTCT GCAGCTTCTC GATCCTCTGC TTCTGAACCT
  CAGCCTCCTC TATGTTCCCT TCCTCTAGAA GCCTGGGGAT TGAGGGCAAA GAGGAAAGGA
  CTGTGCATTG AAAATATAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133178486	ENSMUSSNP4254605	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51231546					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50276266 () rs orientation: forward

Symbol	Name	Function Class
Osbpl3	oxysterol binding protein-like 3	Intron
Rr629972	regulatory region 629972	1495 bp proximal
Rr629973	regulatory region 629973	1847 bp proximal