rs51221935 SNP Detail

Summary

• ID
  rs51221935
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116762165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTT ACAGTGATGG CCTGGAGTCT
  Y
  CCCTTCACCA GCTCAGCTTC TTCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60435448	NES15933260	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51221935					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435448	NES15933260	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116762165 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930455H04Rik	RIKEN cDNA 4930455H04 gene			Coding-Synonymous
Gm52613	predicted gene, 52613			503 bp downstream
Palmd	palmdelphin			Coding-Synonymous
				Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr583814	regulatory region 583814			1881 bp distal
Rr583815	regulatory region 583815			1312 bp distal
Rr583816	regulatory region 583816			1709 bp distal
Rr583817	regulatory region 583817			239 bp distal
Rr583818	regulatory region 583818			332 bp proximal
Tssr35360	transcription start site region 35360			22 bp downstream
Tssr35361	transcription start site region 35361			47 bp downstream
Tssr35362	transcription start site region 35362			112 bp downstream
Tssr35363	transcription start site region 35363			160 bp downstream
Tssr35364	transcription start site region 35364			196 bp downstream
Tssr35365	transcription start site region 35365			256 bp downstream
Tssr35366	transcription start site region 35366			274 bp downstream
Tssr35367	transcription start site region 35367			311 bp downstream
Tssr35368	transcription start site region 35368			412 bp downstream
Tssr35369	transcription start site region 35369			453 bp downstream
Tssr35370	transcription start site region 35370			496 bp downstream
Tssr35371	transcription start site region 35371			998 bp downstream